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1

Archaeal Extrachromosomal Genetic Elements

Wang, Haina, Peng, Nan, Shah, Shiraz A., Huang, Li, She, Qunxin

Journal:

Microbiology and Molecular Biology Reviews

Year:

2015

Language:

english

File:

PDF, 4.93 MB

english, 2015

2

An updated evolutionary classification of CRISPR–Cas systems

Makarova, Kira S., Wolf, Yuri I., Alkhnbashi, Omer S., Costa, Fabrizio, Shah, Shiraz A., Saunders, Sita J., Barrangou, Rodolphe, Brouns, Stan J. J., Charpentier, Emmanuelle, Haft, Daniel H., Horvath,

Journal:

Nature Reviews Microbiology

Year:

2015

Language:

english

File:

PDF, 531 KB

english, 2015

3

CRISPRStudio: A User-Friendly Software for Rapid CRISPR Array Visualization

Dion, Moïra, Labrie, Simon, Shah, Shiraz, Moineau, Sylvain

Journal:

Year:

2018

Language:

english

File:

PDF, 3.53 MB

english, 2018

4

Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages

Mathieu, AurÃ©lie, Dion, MoÃ¯ra, Deng, Ling, Tremblay, Denise, Moncaut, Elisabeth, Shah, Shiraz A., Stokholm, Jakob, Krogfelt, Karen A., SchjÃ¸rring, Susanne, Bisgaard, Hans, Nielsen, Dennis S., Moine

Journal:

Nature Communications

Year:

2020

Language:

english

File:

PDF, 1.21 MB

english, 2020

5

ChemInform Abstract: One-Pot, Three-Component Reactions of Isocyanides, Dialkyl Acetylenedicarboxylates, and Non-Cyclic Anhydrides: Synthesis of 2,5-Diaminofuran Derivatives and Dialkyl (E)-2-[(N-Acyl-N-alkylamino)carbonyl]-2-butenedioates.

Mohammad Bayat, Hossein Imanieh, Nader Zabarjad Shiraz, Mohammad Shah Qavidel

Journal:

Year:

2010

File:

PDF, 24 KB

2010

6

One-pot, three-component reaction of isocyanides, dialkyl acetylenedicarboxylates, and non-cyclic anhydrides: synthesis of 2,5-diaminofuran derivatives and dialkyl (E)-2-[(N-acyl-N-alkylamino)carbonyl]-2-butenedioates

Mohammad Bayat, Hossein Imanieh, Nader Zabarjad Shiraz, Mohammad Shah Qavidel

Journal:

Monatshefte für Chemie - Chemical Monthly

Year:

2010

Language:

english

File:

PDF, 276 KB

english, 2010

7

Genomic analysis ofAcidianus hospitalisW1 a host for studying crenarchaeal virus and plasmid life cycles

Xiao-Yan You, Chao Liu, Sheng-Yue Wang, Cheng-Ying Jiang, Shiraz A. Shah, David Prangishvili, Qunxin She, Shuang-Jiang Liu, Roger A. Garrett

Journal:

Year:

2011

Language:

english

File:

PDF, 736 KB

english, 2011

8

CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

Reidun K. Lillestøl, Shiraz A. Shah, Kim Brügger, Peter Redder, Hien Phan, Jan Christiansen, Roger A. Garrett

Journal:

Molecular Microbiology

Year:

2009

Language:

english

File:

PDF, 627 KB

english, 2009

9

Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism

Peter Redder, Xu Peng, Kim Brügger, Shiraz A. Shah, Ferdinand Roesch, Bo Greve, Qunxin She, Christa Schleper, Patrick Forterre, Roger A. Garrett, David Prangishvili

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 720 KB

english, 2009

10

Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles

Roger A. Garrett, David Prangishvili, Shiraz A. Shah, Monika Reuter, Karl O. Stetter, Xu Peng

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 1.05 MB

english, 2010

11

Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome

Tom Coenye, Pavel Drevinek, Eshwar Mahenthiralingam, Shiraz Ali Shah, Ryan T. Gill, Peter Vandamme, David W. Ussery

Journal:

FEMS Microbiology Letters

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

12

Screening for Depression by the Nursing Staff in an Acute Psychogeriatric Unit

Shiraz Akoo, Ajit Shah

Journal:

Australasian Journal on Ageing

Year:

1998

Language:

english

File:

PDF, 343 KB

english, 1998

13

CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems

Shiraz A. Shah, Roger A. Garrett

Journal:

Research in Microbiology

Year:

2011

Language:

english

File:

PDF, 849 KB

english, 2011

14

Archaeal CRISPR-based immune systems: exchangeable functional modules

Roger A. Garrett, Gisle Vestergaard, Shiraz A. Shah

Journal:

Trends in Microbiology

Year:

2011

Language:

english

File:

PDF, 704 KB

english, 2011

15

Heart Failure Readmissions

Khanjan B. Shah MD, Shiraz Rahim BA…

Journal:

Current Treatment Options in Cardiovascular Medicine

Year:

2013

Language:

english

File:

PDF, 165 KB

english, 2013

16

A novel single-tailed fusiformSulfolobusvirus STSV2 infecting modelSulfolobusspecies

Erdmann, Susanne, Chen, Bo, Huang, Xiaoxing, Deng, Ling, Liu, Chao, Shah, Shiraz A., Moine Bauer, Sven, Sobrino, Carlos León, Wang, Haina, Wei, Yunlin, She, Qunxin, Garrett, Roger A., Huang, Li, Lin,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

17

Unicast routing protocols for urban vehicular networks: review, taxonomy, and open research issues

Syed Adeel Ali Shah,Muhammad Shiraz…

Journal:

Journal of Zhejiang University SCIENCE C

Year:

2014

Language:

english

File:

PDF, 910 KB

english, 2014

18

A Study on the Critical Analysis of Computational Offloading Frameworks for Mobile Cloud Computing

Shiraz, Muhammad, Sookhak, Mehdi, Gani, Abdullah, Shah, Syed Adeel Ali

Journal:

Journal of Network and Computer Applications

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

19

A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus

Deng, Ling, Garrett, Roger A., Shah, Shiraz A., Peng, Xu, She, Qunxin

Journal:

Molecular Microbiology

Year:

2013

Language:

english

File:

PDF, 1.37 MB

english, 2013

20

Botnet detection techniques: review, future trends, and issues

Karim, Ahmad, Salleh, Rosli Bin, Shiraz, Muhammad, Shah, Syed Adeel Ali, Awan, Irfan, Anuar, Nor Badrul

Journal:

Journal of Zhejiang University SCIENCE C

Year:

2014

Language:

english

File:

PDF, 787 KB

english, 2014

21

Protospacer recognition motifs

Shah, Shiraz A., Erdmann, Susanne, Mojica, Francisco J.M., Garrett, Roger A.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

22

CRISPR adaptive immune systems of Archaea

Vestergaard, Gisle, Garrett, Roger A, Shah, Shiraz A

Journal:

Year:

2014

Language:

english

File:

PDF, 1.19 MB

english, 2014

23

CRISPR-Cas Adaptive Immune Systems of the Sulfolobales: Unravelling Their Complexity and Diversity

Garrett, Roger, Shah, Shiraz, Erdmann, Susanne, Liu, Guannan, Mousaei, Marzieh, León-Sobrino, Carlos, Peng, Wenfang, Gudbergsdottir, Soley, Deng, Ling, Vestergaard, Gisle, Peng, Xu, She, Qunxin

Journal:

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

24

Traumatic diaphragmatic rupture, a diagnostic dilemma in the presence of eventration: a case report

Lone, Reyaz Ahmad, Sharma, Mukand Lal, Wani, Mahmood, Rather, Shiraz, Ahangar, Abdul Gani, Rasool, Fouzia, Bhat, Mohd Akbar, Dar, Abdul Majid, Lone, Guhlam Nabi, Singh, Shyam, Mir, Ishtiyaq, Shah, Sha

Journal:

Year:

2009

Language:

english

File:

PDF, 1.25 MB

english, 2009

25

Adaptive Beaconing Approaches for Vehicular Ad Hoc Networks: A Survey

Shah, Syed Adeel Ali, Ahmed, Ejaz, Xia, Feng, Karim, Ahmad, Shiraz, Muhammad, Noor, Rafidah Md

Journal:

IEEE Systems Journal

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

26

Characterizing leader sequences of CRISPR loci

Alkhnbashi, Omer S., Shah, Shiraz A., Garrett, Roger A., Saunders, Sita J., Costa, Fabrizio, Backofen, Rolf

Journal:

Year:

2016

Language:

english

File:

PDF, 979 KB

english, 2016

27

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism

Shah, Shiraz Ali, Hansen, Niels R., Garrett, Roger A.

Journal:

Biochemical Society Transactions

Year:

2009

Language:

english

File:

PDF, 377 KB

english, 2009

28

CRISPR-based immune systems of the Sulfolobales: complexity and diversity

Garrett, Roger A., Shah, Shiraz A., Vestergaard, Gisle, Deng, Ling, Gudbergsdottir, Soley, Kenchappa, Chandra S., Erdmann, Susanne, She, Qunxin

Journal:

Biochemical Society Transactions

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

29

Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding

Bendtsen, Kirstine L., Xu, Kehan, Luckmann, Majbritt, Winther, Kristoffer S., Shah, Shiraz A., Pedersen, Christian N. S., Brodersen, Ditlev E.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.71 MB

english, 2016

30

FANCD2 binding identifies conserved fragile sites at large transcribed genes in avian cells

Pentzold, Constanze, Shah, Shiraz Ali, Hansen, Niels Richard, Le Tallec, Benoît, Seguin-Orlando, Andaine, Debatisse, Michelle, Lisby, Michael, Oestergaard, Vibe H

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.34 MB

english, 2017

31

ATLANTIS - Attractor Landscape Analysis Toolbox for Cell Fate Discovery and Reprogramming

Shah, Osama Shiraz, Chaudhary, Muhammad Faizyab Ali, Awan, Hira Anees, Fatima, Fizza, Arshad, Zainab, Amina, Bibi, Ahmed, Maria, Hameed, Hadia, Furqan, Muhammad, Khalid, Shareef, Faisal, Amir, Chaudha

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.30 MB

english, 2018

32

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR- cas gene cassettes reveals 39 new cas gene families

Shah, Shiraz A., Alkhnbashi, Omer S., Behler, Juliane, Han, Wenyuan, She, Qunxin, Hess, Wolfgang R., Garrett, Roger A., Backofen, Rolf

Journal:

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

33

Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array

Makarova, Kira S, Karamycheva, Svetlana, Shah, Shiraz A, Vestergaard, Gisle, Garrett, Roger A, Koonin, Eugene V

Journal:

FEMS Microbiology Letters

Year:

2019

Language:

english

File:

PDF, 995 KB

english, 2019

34

[IEEE 2018 IEEE Punecon - Pune, India (2018.11.30-2018.12.2)] 2018 IEEE Punecon - A Comprehensive Analysis Between Popular Symmetric Encryption Algorithms

Ghosh, Shiraz Saptarshi, Parmar, Harshwardhan, Shah, Prasham, Samdani, Krishna

Year:

2018

Language:

english

File:

PDF, 739 KB

english, 2018

35

[IEEE 2018 IEEE Punecon - Pune, India (2018.11.30-2018.12.2)] 2018 IEEE Punecon - A Comprehensive Analysis Between Popular Symmetric Encryption Algorithms

Ghosh, Shiraz Saptarshi, Parmar, Harshwardhan, Shah, Prasham, Samdani, Krishna

Year:

2018

File:

PDF, 739 KB

2018

36

Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids

Pinilla-Redondo, Rafael, Mayo-Muñoz, David, Russel, Jakob, Garrett, Roger A, Randau, Lennart, Sørensen, Søren J, Shah, Shiraz A

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 2.14 MB

2019

37

Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing

Gummesson, Bertil, Shah, Shiraz Ali, Borum, Alexander Skov, Fessler, Mathias, Mitarai, Namiko, SÃ¸rensen, Michael Askvad, Svenningsen, Sine Lo

Journal:

Frontiers in Genetics

Year:

2020

Language:

english

File:

PDF, 2.88 MB

english, 2020

38

CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

Padilha, Victor A, Alkhnbashi, Omer S, Shah, Shiraz A, deÂ Carvalho, AndrÃ© C P L F, Backofen, Rolf

Journal:

Year:

2020

File:

PDF, 754 KB

2020

39

Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma

Stokholm, Jakob, Thorsen, Jonathan, Blaser, Martin J., Rasmussen, Morten A., HjelmsÃ¸, Mathis, Shah, Shiraz, Christensen, Emil D., Chawes, Bo L., BÃ¸nnelykke, Klaus, Brix, Susanne, Mortensen, Martin S

Journal:

Science Translational Medicine

Year:

2020

File:

PDF, 1.25 MB

2020

40

Identifying Genomic Alterations in Patients With Stage IV Breast Cancer Using MammaSeq: An International Collaborative Study

Shah, Osama Shiraz, Soran, Atilla, Sahin, Mustafa, Knapick, Beth A., Ugras, Serdar, Celik, Esin, Lucas, Peter C., Lee, Adrian V.

Journal:

Clinical Breast Cancer

Year:

2020

File:

PDF, 77 KB

2020

41

Urbanized microbiota in infants, immune constitution and later risk of atopic diseases

LehtimÃ¤ki, Jenni, Thorsen, Jonathan, Rasmussen, Morten Arendt, HjelmsÃ¸, Mathis, Shah, Shiraz, Mortensen, Martin S., Trivedi, Urvish, Vestergaard, Gisle, BÃ¸nnelykke, Klaus, Chawes, Bo Lund, Brix, Su

Journal:

Journal of Allergy and Clinical Immunology

Year:

2020

File:

PDF, 1.82 MB

2020